Peggy Farnham: search on Z-Library

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1

ZFX acts as a transcriptional activator in multiple types of human tumors by binding downstream of transcription start sites at the majority of CpG island promoters

Rhie, Suhn Kyong, Yao, Lijun, Luo, Zhifei, Witt, Heather, Schreiner, Shannon, Guo, Yu, Perez, Andrew A, Farnham, Peggy J

Journal:

Genome Research

Year:

2018

Language:

english

File:

PDF, 8.03 MB

english, 2018

2

The Human Epigenome Browser at Washington University

Zhou, Xin, Maricque, Brett, Xie, Mingchao, Li, Daofeng, Sundaram, Vasavi, Martin, Eric A, Koebbe, Brian C, Nielsen, Cydney, Hirst, Martin, Farnham, Peggy, Kuhn, Robert M, Zhu, Jingchun, Smirnov, Ivan,

Journal:

Year:

2011

Language:

english

File:

PDF, 381 KB

english, 2011

3

Regulatory network decoded from epigenomes of surface ectoderm-derived cell types

Lowdon, Rebecca F., Zhang, Bo, Bilenky, Misha, Mauro, Thea, Li, Daofeng, Gascard, Philippe, Sigaroudinia, Mahvash, Farnham, Peggy J., Bastian, Boris C., Tlsty, Thea D., Marra, Marco A., Hirst, Martin,

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 1.53 MB

english, 2014

4

No effect of loss of E2F1 on liver regeneration or hepatocarcinogenesis in C57BL/6J or C3H/HeJ mice

Erika R. Lukas, Stephanie M. Bartley, Carrie R. Graveel, Zobeida M. Diaz, Nicholas Dyson, Ed Harlow, Lili Yamasaki, Peggy J. Farnham

Journal:

Molecular Carcinogenesis

Year:

1999

Language:

english

File:

PDF, 168 KB

english, 1999

5

CAD, a c-Myc target gene, is not deregulated in Burkitt's lymphoma cell lines

Susanna M. Mac, Peggy J. Farnham

Journal:

Molecular Carcinogenesis

Year:

2000

Language:

english

File:

PDF, 296 KB

english, 2000

6

Direct recruitment of N-myc to target gene promoters

Susanna M. Mac, Caroline A. D'Cunha, Peggy J. Farnham

Journal:

Molecular Carcinogenesis

Year:

2000

Language:

english

File:

PDF, 177 KB

english, 2000

7

Transcriptional regulation of the dihydrofolate reductase gene

Jill E. Slansky, Peggy J. Farnham

Journal:

Year:

1996

Language:

english

File:

PDF, 1.04 MB

english, 1996

8

Strain-dependent differences in DNA synthesis and gene expression in the regenerating livers of C57BL/6J and C3H/HeJ mice

L. Michelle Bennett, Peggy J. Farnham, Norman R. Drinkwater

Journal:

Molecular Carcinogenesis

Year:

1995

Language:

english

File:

PDF, 689 KB

english, 1995

9

Use of chromatin immunoprecipitation to study transcriptional deregulation in cancer cells

Farnham, Peggy, Graveel, Carrie, Kirmizis, Antonis, Bartley, Stephanie, Kel, Alexander, Kel-Margoulis, Olga, Wingender, Edgar, Zhang, Michael, Jatkoe, Tim, Madore, Steven

Journal:

Nature Genetics

Year:

2001

Language:

english

File:

PDF, 29 KB

english, 2001

10

Analysis of gene expression alterations in mouse and human hepatocellular carcinomas

Graveel, Carrie, Jatkoe, Tim, Madore, Steve, Holt, Alison, Farnham, Peggy

Journal:

Nature Genetics

Year:

2001

Language:

english

File:

PDF, 31 KB

english, 2001

11

Insights from genomic profiling of transcription factors

Farnham, Peggy J.

Journal:

Nature Reviews Genetics

Year:

2009

Language:

english

File:

PDF, 506 KB

english, 2009

12

Expression profiling and identification of novel genes in hepatocellular carcinomas

Graveel, Carrie R, Jatkoe, Tim, Madore, Steven J, Holt, Alison L, Farnham, Peggy J

Journal:

Year:

2001

Language:

english

File:

PDF, 278 KB

english, 2001

13

Identification of novel pRb binding sites using CpG microarrays suggests that E2F recruits pRb to specific genomic sites during S phase

Wells, Julie, Yan, Pearlly S, Cechvala, Meredith, Huang, Tim, Farnham, Peggy J

Journal:

Year:

2003

Language:

english

File:

PDF, 466 KB

english, 2003

14

Identification and characterization of CRG-L2, a new marker for liver tumor development

Graveel, Carrie R, Harkins-Perry, Sarah R, Acevedo, Luis G, Farnham, Peggy J

Journal:

Year:

2003

Language:

english

File:

PDF, 273 KB

english, 2003

15

The role of E2F in the mammalian cell cycle

Peggy J. Farnham, Jill E. Slansky, Richard Kollamar

Journal:

Biochimica et Biophysica Acta (BBA) - Reviews on Cancer

Year:

1993

Language:

english

File:

PDF, 663 KB

english, 1993

16

Significant Linkage Evidence for a Predisposition Gene for Pelvic Floor Disorders on Chromosome 9q21

Kristina Allen-Brady, Peggy A. Norton, James M. Farnham, Craig Teerlink, Lisa A. Cannon-Albright

Journal:

The American Journal of Human Genetics

Year:

2009

Language:

english

File:

PDF, 262 KB

english, 2009

17

Review of the 1998 Keystone Symposium on Transcriptional Mechanisms Taos, NM, USA, February 21–26, 1998

Journal:

Biochimica et Biophysica Acta (BBA) - Reviews on Cancer

Year:

1998

Language:

english

File:

PDF, 167 KB

english, 1998

18

Analysis of Myc Bound Loci Identified by CpG Island Arrays Shows that Max Is Essential for Myc-Dependent Repression

Daniel Y.L. Mao, John D. Watson, Pearlly S. Yan, Dalia Barsyte-Lovejoy, Fereshteh Khosravi, W.Wei-Lynn Wong, Peggy J. Farnham, Tim H.-M. Huang, Linda Z. Penn

Journal:

Current Biology

Year:

2003

Language:

english

File:

PDF, 189 KB

english, 2003

19

De novoidentification ofin vivobinding sites from ChIP-chip data

Victor Jin, Alina Rabinovich, Henny O'Geen, Sushma Iyengar, Peggy Farnham

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 131 KB

english, 2008

20

Genome-wide binding of the orphan nuclear receptor TR4 suggests its general role in fundamental biological processes

Henriette O'Geen, Yu-Hsuan Lin, Xiaoqin Xu, Lorigail Echipare, Vitalina M Komashko, Daniel He, Seth Frietze, Osamu Tanabe, Lihong Shi, Maureen A Sartor, James D Engel, Peggy J Farnham

Journal:

Year:

2010

Language:

english

File:

PDF, 1.10 MB

english, 2010

21

Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors

Alexander E. Kel, Olga V. Kel-Margoulis, Peggy J. Farnham, Stephanie M. Bartley, Edgar Wingender, Michael Q. Zhang

Journal:

Journal of Molecular Biology

Year:

2001

Language:

english

File:

PDF, 430 KB

english, 2001

22

Functional Demarcation of Active and Silent Chromatin Domains in Human HOX Loci by Noncoding RNAs

John L. Rinn, Michael Kertesz, Jordon K. Wang, Sharon L. Squazzo, Xiao Xu, Samantha A. Brugmann, L. Henry Goodnough, Jill A. Helms, Peggy J. Farnham, Eran Segal, Howard Y. Chang

Journal:

Year:

2007

Language:

english

File:

PDF, 2.10 MB

english, 2007

23

Discovering Hematopoietic Mechanisms through Genome-wide Analysis of GATA Factor Chromatin Occupancy

Tohru Fujiwara, Henriette O'Geen, Sunduz Keles, Kimberly Blahnik, Amelia K. Linnemann, Yoon-A. Kang, Kyunghee Choi, Peggy J. Farnham, Emery H. Bresnick

Journal:

Year:

2009

Language:

english

File:

PDF, 1.06 MB

english, 2009

24

L3MBTL2 Protein Acts in Concert with PcG Protein-Mediated Monoubiquitination of H2A to Establish a Repressive Chromatin Structure

Patrick Trojer, Alina R. Cao, Zhonghua Gao, Yan Li, Jin Zhang, Xiaoqin Xu, Guohong Li, Regine Losson, Hediye Erdjument-Bromage, Paul Tempst, Peggy J. Farnham, Danny Reinberg

Journal:

Year:

2011

Language:

english

File:

PDF, 1.36 MB

english, 2011

25

Characterization of the 3′ untranslated region of mouse E2F1 mRNA

Stephanie M. Bartley, Renee J. Szakaly, Peggy J. Farnham

Journal:

Year:

1998

Language:

english

File:

PDF, 347 KB

english, 1998

26

Characterizing transcription factor binding sites using formaldehyde crosslinking and immunoprecipitation

Julie Wells, Peggy J. Farnham

Journal:

Year:

2002

Language:

english

File:

PDF, 235 KB

english, 2002

27

In vivo assays to examine transcription factor localization and target gene specificity

Peggy J. Farnham

Journal:

Year:

2002

Language:

english

File:

PDF, 43 KB

english, 2002

28

Identification of unknown target genes of human transcription factors using chromatin immunoprecipitation

Amy S Weinmann, Peggy J Farnham

Journal:

Year:

2002

Language:

english

File:

PDF, 171 KB

english, 2002

29

T-bet Regulates the Terminal Maturation and Homeostasis of NK and Vα14i NKT Cells

Michael J Townsend, Amy S Weinmann, Jennifer L Matsuda, Rachelle Salomon, Peggy J Farnham, Christine A Biron, Laurent Gapin, Laurie H Glimcher

Journal:

Year:

2004

Language:

english

File:

PDF, 824 KB

english, 2004

30

Cell type-specific binding patterns reveal that TCF7L2 can be tethered to the genome by association with GATA3

Seth Frietze, Rui Wang, Lijing Yao, Yu Gyoung Tak, Zhenqing Ye, Malaina Gaddis, Heather Witt, Peggy J Farnham, Victor X Jin

Journal:

Year:

2012

Language:

english

File:

PDF, 3.30 MB

english, 2012

31

Expression cloning of a cDNA encoding a retinoblastoma-binding protein with E2F-like properties

William G. Kaelin Jr., Wilhelm Krek, William R. Sellers, James A. DeCaprio, Florence Ajchenbaum, Charles S. Fuchs, Thomas Chittenden, Yue Li, Peggy J. Farnham, Michael A. Blanar, David M. Livingston,

Journal:

Year:

1992

Language:

english

File:

PDF, 3.11 MB

english, 1992

32

ZBTB33 binds unmethylated regions of the genome associated with actively expressed genes

Blattler, Adam, Yao, Lijing, Wang, Yao, Ye, Zhenqing, Jin, Victor X, Farnham, Peggy J

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 1.84 MB

english, 2013

33

Selective regulation of lymphopoiesis and leukemogenesis by individual zinc fingers of Ikaros

Schjerven, Hilde, McLaughlin, Jami, Arenzana, Teresita L, Frietze, Seth, Cheng, Donghui, Wadsworth, Sarah E, Lawson, Gregory W, Bensinger, Steven J, Farnham, Peggy J, Witte, Owen N, Smale, Stephen T

Journal:

Nature Immunology

Year:

2013

Language:

english

File:

PDF, 1.96 MB

english, 2013

34

A model for transcription termination suggested by studies on the trp attenuator in vitro using base analogs

Farnham, Peggy J, Platt, Terry

Journal:

Year:

1980

Language:

english

File:

PDF, 3.53 MB

english, 1980

35

krox 20 messenger RNA and protein expression in the adult central nervous system

Mack, Kenneth J., Cortner, Janelle, Mack, Pat, Farnham, Peggy J.

Journal:

Molecular Brain Research

Year:

1992

Language:

english

File:

PDF, 1.05 MB

english, 1992

36

Effects of NusA protein on transcription termination in the tryptophan operon of Escherichia coli

Farnham, Peggy J., Greenblatt, Jack, Platt, Terry

Journal:

Year:

1982

Language:

english

File:

PDF, 3.07 MB

english, 1982

37

[Part 2: Biological Sciences] || Synthetic Sites for Transcription Termination and a Functional Comparison with Tryptophan Operon Termination Sites in vitro

Gail E. Christie, Peggy J. Farnham and Terry Platt

Journal:

Proceedings of the National Academy of Sciences

Year:

1981

Language:

english

File:

PDF, 1.20 MB

english, 1981

38

[Part 1: Biological Sciences] || Effects of DNA Base Analogs on Transcription Termination at the Tryptophan Operon Attenuator of Escherichia coli

Peggy J. Farnham and Terry Platt

Journal:

Proceedings of the National Academy of Sciences

Year:

1982

Language:

english

File:

PDF, 1.26 MB

english, 1982

39

Ultrastructural Features of Minute Chromosomes in a Methotrexate-Resistant Mouse 3T3 Cell Line

Barbara A. Hamkalo, Peggy J. Farnham, Randal Johnston and Robert T. Schimke

Journal:

Proceedings of the National Academy of Sciences

Year:

1985

Language:

english

File:

PDF, 3.09 MB

english, 1985

40

Opposite-Strand RNAs from the 5′Flanking Region of the Mouse Dihydrofolate Reductase Gene

Peggy J. Farnham, John M. Abrams and Robert T. Schimke

Journal:

Proceedings of the National Academy of Sciences

Year:

1985

Language:

english

File:

PDF, 960 KB

english, 1985

41

c-Myc Target Gene Specificity is Determined by a Post-DNA-Binding Mechanism

Kathryn E. Boyd, Julie Wells, Julie Gutman, Stephanie M. Bartley and Peggy J. Farnham

Journal:

Proceedings of the National Academy of Sciences

Year:

1998

Language:

english

File:

PDF, 1.81 MB

english, 1998

42

Functional annotation of colon cancer risk SNPs

Yao, Lijing, Tak, Yu Gyoung, Berman, Benjamin P., Farnham, Peggy J.

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 878 KB

english, 2014

43

Can genome engineering be used to target cancer-associated enhancers?

Grimmer, Matthew R, Farnham, Peggy J

Journal:

Year:

2014

Language:

english

File:

PDF, 1.06 MB

english, 2014

44

Global loss of DNA methylation uncovers intronic enhancers in genes showing expression changes

Blattler, Adam, Yao, Lijing, Witt, Heather, Guo, Yu, Nicolet, Charles M, Berman, Benjamin P, Farnham, Peggy J

Journal:

Year:

2014

Language:

english

File:

PDF, 4.09 MB

english, 2014

45

KAP1 Protein: An Enigmatic Master Regulator of the Genome

Iyengar, Sushma, Farnham, Peggy J.

Journal:

Journal of Biological Chemistry

Year:

2011

Language:

english

File:

PDF, 2.78 MB

english, 2011

46

5-azacytidine treatment reorganizes genomic histone modification patterns

Komashko, Vitalina M., Farnham, Peggy J.

Journal:

Year:

2010

Language:

english

File:

PDF, 1.62 MB

english, 2010

47

Rho-independent termination: dyad symmetry in DNA causes RNA polymerase to pause during transcription in vitro

Farnham, Peggy J., Platt, Terry

Journal:

Nucleic Acids Research

Year:

1981

Language:

english

File:

PDF, 2.81 MB

english, 1981

48

Genome-Wide Analysis of KAP1 Binding Suggests Autoregulation of KRAB-ZNFs

O'Geen, Henriette, Squazzo, Sharon L., Iyengar, Sushma, Blahnik, Kim, Rinn, John L., Chang, Howard Y., Green, Roland, Farnham, Peggy J.

Journal:

Year:

2007

Language:

english

File:

PDF, 998 KB

english, 2007

49

Evidence for pelvic organ prolapse predisposition genes on chromosomes 10 and 17

Allen-Brady, Kristina, Cannon-Albright, Lisa A., Farnham, James M., Norton, Peggy A.

Journal:

American Journal of Obstetrics and Gynecology

Year:

2015

Language:

english

File:

PDF, 1.08 MB

english, 2015

50

The role of DNA methylation in directing the functional organization of the cancer epigenome

Lay, Fides D., Liu, Yaping, Kelly, Theresa K., Witt, Heather, Farnham, Peggy J., Jones, Peter A., Berman, Benjamin P.

Journal:

Genome Research

Year:

2015

Language:

english

File:

PDF, 1.77 MB

english, 2015